7.1.3. generic_cobalt module reference¶

Generic version of the COBALTv3.0 that includes 4 phytoplankton functional groups and photoacclimation and photoadaptation improvements.

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7.1.3.1. Data Types¶

`phytoplankton`	phytoplankton data type
`zooplankton`	zooplankton data type
`bacteria`	bacteria data type
`generic_cobalt_type`	data type for other variables used in `generic_cobalt()` module module
`vardesc`	An auxiliary type for storing varible names.

7.1.3.2. Functions/Subroutines¶

`generic_cobalt_register()`
`generic_cobalt_init()`
`generic_cobalt_register_diag()`
`user_add_params()`
`user_add_tracers()`
`generic_cobalt_update_from_coupler()`
`generic_cobalt_update_from_bottom()`
`generic_cobalt_update_from_source()`
`generic_cobalt_set_boundary_values()`
`generic_cobalt_end()`
`user_allocate_arrays()`
`user_deallocate_arrays()`
`calc_pka_nh3()`
`saltout_correction()`	salting out correction for solubility (Johnson 2010, Ocean Science)
`schmidt_w()`
`v_sw()`
`p_sw()`
`d_wc()`
`d_hm()`
`n_sw()`

7.1.3.3. Detailed Description¶

Generic version of the COBALTv3.0 that includes 4 phytoplankton functional groups and photoacclimation and photoadaptation improvements.

7.1.3.4. Type Documentation¶

type generic_cobalt/phytoplankton¶

phytoplankton data type

Type fields

% alpha_hl [real,private] :: Chlorophyll a-specific initial slope of the photosynthesis-irradiance curve high level (g C g Chl-1 sec-1 (W m-2)-1)
% alpha_ll [real,private] :: Chlorophyll a-specific initial slope of the photosynthesis-irradiance curve low level (g C g Chl-1 sec-1 (W m-2)-1)
% fe_2_n_max [real,private] :: Maximum iron to nitrogen ratio (mol Fe mol N-1)
% p_2_n_static [real,private] :: Fixed P:N ratio in phytoplankton (mol P mol N-1)
% p_2_n_min [real,private] :: Minimum P:N ratio (mol P mol N-1)
% p_2_n_slope [real,private] :: P:N slope (mol P mol N-1 mol P-1 kg)
% p_2_n_max [real,private] :: Maximum P:N ratio (mol P mol N-1)
% k_fe_2_n [real,private] :: Half-saturation iron to nitrogen for phytoplankton growth (mol Fe mol N-1)
% k_fed [real,private] :: Half-saturation constant for iron uptake (mol Fed kg-1)
% k_nh4 [real,private] :: Half-saturation constant for ammonium limitation (mol NH4 kg-1)
% k_no3 [real,private] :: Half-saturation constant for nitrate limitation (mol NO3 kg-1)
% k_po4 [real,private] :: Half-saturation constant for phosphate limitation (mol PO4 kg-1)
% k_sio4 [real,private] :: Half-saturation constant for silicate limitation (mol SiO4 kg-1)
% p_c_max_hl [real,private] :: Light-saturated carbon-specific photosynthesis rate high level (s-1)
% p_c_max_ll [real,private] :: Light-saturated carbon-specific photosynthesis rate low level (s-1)
% si_2_n_max [real,private] :: Maximum silica to nitrogen ratio (mol Si mol N-1)
% si_2_n_static [real,private] :: Fixed SI:N ratio in phytoplankton (mol Si mol N-1)
% thetamax [real,private] :: Maximum chlorophyll to carbon ratio (g Chl g C-1)
% bresp_frac_mixed [real,private] :: basal respiration rate in mixed layer
% bresp_frac_strat [real,private] :: basal respiration rate outside mixed layer
% sink_max [real,private]
% agg [real,private]
% frac_mu_stress [real,private]
% vir [real,private]
% mort [real,private]
% exu [real,private]
% jprod_n_100 [real(:,:),allocatable, private]
% jprod_n_new_100 [real(:,:),allocatable, private]
% jprod_n_n2_100 [real(:,:),allocatable, private]
% jzloss_n_100 [real(:,:),allocatable, private]
% jaggloss_n_100 [real(:,:),allocatable, private]
% jvirloss_n_100 [real(:,:),allocatable, private]
% jmortloss_n_100 [real(:,:),allocatable, private]
% jexuloss_n_100 [real(:,:),allocatable, private]
% f_n_100 [real(:,:),allocatable, private]
% juptake_fe_100 [real(:,:),allocatable, private]
% juptake_po4_100 [real(:,:),allocatable, private]
% juptake_sio4_100 [real(:,:),allocatable, private]
% nlim_bw_100 [real(:,:),allocatable, private]
% plim_bw_100 [real(:,:),allocatable, private]
% def_fe_bw_100 [real(:,:),allocatable, private]
% irrlim_bw_100 [real(:,:),allocatable, private]
% fn_btm [real(:,:),allocatable, private]
% ffe_btm [real(:,:),allocatable, private]
% fp_btm [real(:,:),allocatable, private]
% fsi_btm [real(:,:),allocatable, private]
% p_c_max [real(:,:,:),allocatable, private]
% alpha [real(:,:,:),allocatable, private]
% bresp [real(:,:,:),allocatable, private]
% def_fe [real(:,:,:),allocatable, private]
% def_p [real(:,:,:),allocatable, private]
% f_fe [real(:,:,:),allocatable, private]
% f_n [real(:,:,:),allocatable, private]
% f_p [real(:,:,:),allocatable, private]
% felim [real(:,:,:),allocatable, private]
% irrlim [real(:,:,:),allocatable, private]
% jzloss_fe [real(:,:,:),allocatable, private]
% jzloss_n [real(:,:,:),allocatable, private]
% jzloss_p [real(:,:,:),allocatable, private]
% jzloss_sio2 [real(:,:,:),allocatable, private]
% jaggloss_fe [real(:,:,:),allocatable, private]
% jaggloss_n [real(:,:,:),allocatable, private]
% jaggloss_p [real(:,:,:),allocatable, private]
% jaggloss_sio2 [real(:,:,:),allocatable, private]
% stress_fac [real(:,:,:),allocatable, private]
% jvirloss_fe [real(:,:,:),allocatable, private]
% jvirloss_n [real(:,:,:),allocatable, private]
% jvirloss_p [real(:,:,:),allocatable, private]
% jvirloss_sio2 [real(:,:,:),allocatable, private]
% jmortloss_fe [real(:,:,:),allocatable, private]
% jmortloss_n [real(:,:,:),allocatable, private]
% jmortloss_p [real(:,:,:),allocatable, private]
% jmortloss_sio2 [real(:,:,:),allocatable, private]
% jexuloss_fe [real(:,:,:),allocatable, private]
% jexuloss_n [real(:,:,:),allocatable, private]
% jexuloss_p [real(:,:,:),allocatable, private]
% jhploss_fe [real(:,:,:),allocatable, private]
% jhploss_n [real(:,:,:),allocatable, private]
% jhploss_p [real(:,:,:),allocatable, private]
% jhploss_sio2 [real(:,:,:),allocatable, private]
% juptake_n2 [real(:,:,:),allocatable, private]
% juptake_fe [real(:,:,:),allocatable, private]
% juptake_nh4 [real(:,:,:),allocatable, private]
% juptake_no3 [real(:,:,:),allocatable, private]
% juptake_po4 [real(:,:,:),allocatable, private]
% juptake_sio4 [real(:,:,:),allocatable, private]
% uptake_p_2_n [real(:,:,:),allocatable, private]
% jprod_n [real(:,:,:),allocatable, private]
% liebig_lim [real(:,:,:),allocatable, private]
% mu [real(:,:,:),allocatable, private]
% f_mu_mem [real(:,:,:),allocatable, private]
% mu_mix [real(:,:,:),allocatable, private]
% nh4lim [real(:,:,:),allocatable, private]
% no3lim [real(:,:,:),allocatable, private]
% po4lim [real(:,:,:),allocatable, private]
% o2lim [real(:,:,:),allocatable, private]
% q_fe_2_n [real(:,:,:),allocatable, private]
% q_p_2_n [real(:,:,:),allocatable, private]
% silim [real(:,:,:),allocatable, private]
% q_si_2_n [real(:,:,:),allocatable, private]
% theta [real(:,:,:),allocatable, private]
% chl [real(:,:,:),allocatable, private]
% vmove [real(:,:,:),allocatable, private]
% id_p_c_max [integer,private]
% id_alpha [integer,private]
% id_bresp [integer,private]
% id_def_fe [integer,private]
% id_def_p [integer,private]
% id_felim [integer,private]
% id_irrlim [integer,private]
% id_jzloss_fe [integer,private]
% id_jzloss_n [integer,private]
% id_jzloss_p [integer,private]
% id_jzloss_sio2 [integer,private]
% id_jaggloss_fe [integer,private]
% id_jaggloss_n [integer,private]
% id_jaggloss_p [integer,private]
% id_jaggloss_sio2 [integer,private]
% id_stress_fac [integer,private]
% id_jvirloss_fe [integer,private]
% id_jvirloss_n [integer,private]
% id_jvirloss_p [integer,private]
% id_jvirloss_sio2 [integer,private]
% id_jmortloss_fe [integer,private]
% id_jmortloss_n [integer,private]
% id_jmortloss_p [integer,private]
% id_jmortloss_sio2 [integer,private]
% id_jexuloss_n [integer,private]
% id_jexuloss_p [integer,private]
% id_jexuloss_fe [integer,private]
% id_jhploss_fe [integer,private]
% id_jhploss_n [integer,private]
% id_jhploss_p [integer,private]
% id_jhploss_sio2 [integer,private]
% id_juptake_n2 [integer,private]
% id_juptake_fe [integer,private]
% id_juptake_nh4 [integer,private]
% id_juptake_no3 [integer,private]
% id_juptake_po4 [integer,private]
% id_juptake_sio4 [integer,private]
% id_jprod_n [integer,private]
% id_liebig_lim [integer,private]
% id_mu [integer,private]
% id_f_mu_mem [integer,private]
% id_mu_mix [integer,private]
% id_nh4lim [integer,private]
% id_no3lim [integer,private]
% id_po4lim [integer,private]
% id_o2lim [integer,private]
% id_q_fe_2_n [integer,private]
% id_q_p_2_n [integer,private]
% id_silim [integer,private]
% id_q_si_2_n [integer,private]
% id_theta [integer,private]
% id_chl [integer,private]
% id_vmove [integer,private]
% id_jprod_n_100 [integer,private]
% id_jprod_n_new_100 [integer,private]
% id_jprod_n_n2_100 [integer,private]
% id_jzloss_n_100 [integer,private]
% id_jaggloss_n_100 [integer,private]
% id_jvirloss_n_100 [integer,private]
% id_jmortloss_n_100 [integer,private]
% id_jexuloss_n_100 [integer,private]
% id_f_n_100 [integer,private]
% id_sfc_f_n [integer,private]
% id_sfc_chl [integer,private]
% id_sfc_def_fe [integer,private]
% id_sfc_felim [integer,private]
% id_sfc_q_fe_2_n [integer,private]
% id_sfc_q_p_2_n [integer,private]
% id_sfc_nh4lim [integer,private]
% id_sfc_no3lim [integer,private]
% id_sfc_po4lim [integer,private]
% id_sfc_irrlim [integer,private]
% id_sfc_theta [integer,private]
% id_sfc_mu [integer,private]
% id_fn_btm [integer,private]
% id_fp_btm [integer,private]
% id_ffe_btm [integer,private]
% id_fsi_btm [integer,private]

type generic_cobalt/zooplankton¶

zooplankton data type

Type fields

% imax [real,private] :: maximum ingestion rate (sec-1)
% ki [real,private] :: half-sat for ingestion (moles N m-3)
% gge_max [real,private] :: max gross growth efficiciency (approached as i >> bresp, dimensionless)
% nswitch [real,private] :: switching parameter (dimensionless)
% mswitch [real,private] :: switching parameter (dimensionless)
% bresp [real,private] :: basal respiration rate (sec-1)
% ktemp [real,private] :: temperature dependence of zooplankton rates (C-1)
% upswim_chl_thresh [real,private] :: threshold for swimming the the mixed layer (chl/chl_surf < thresh)
% upswim_i_thresh [real,private] :: Irradiance threshold for upward swimming (watts m-2)
% swim_max [real,private] :: maximum upward swimming speed (m s-2)
% phi_det [real,private] :: fraction of ingested N to detritus
% phi_ldon [real,private] :: fraction of ingested N/P to labile don
% phi_sldon [real,private] :: fraction of ingested N/P to semi-labile don
% phi_srdon [real,private] :: fraction of ingested N/P to semi-refractory don
% phi_ldop [real,private] :: fraction of ingested N/P to labile dop
% phi_sldop [real,private] :: fraction of ingested N/P to semi-labile dop
% phi_srdop [real,private] :: fraction of ingested N/P to semi-refractory dop
% q_p_2_n [real,private] :: p:n ratio of zooplankton
% ipa_smp [real,private] :: innate prey availability of low-light adapt. small phytos
% ipa_mdp [real,private] :: innate prey availability of medium phytoplankton
% ipa_lgp [real,private] :: innate prey availability of large phytoplankton
% ipa_diaz [real,private] :: innate prey availability of diazotrophs
% ipa_smz [real,private] :: innate prey availability of small zooplankton
% ipa_mdz [real,private] :: innate prey availability of large zooplankton
% ipa_lgz [real,private] :: innate prey availability of x-large zooplankton
% ipa_det [real,private] :: innate prey availability of detritus
% ipa_bact [real,private] :: innate prey availability for bacteria
% jprod_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen prod. integral in upper 100m
% jingest_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen ingestion integral in upper 100m
% jzloss_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen loss to zooplankton integral in upper 100m
% jhploss_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen loss to higher preds. integral in upper 100m
% jprod_ndet_100 [real(:,:),allocatable, private] :: zooplankton nitrogen detritus prod. integral in upper 100m
% jprod_don_100 [real(:,:),allocatable, private] :: zooplankton dissolved org. nitrogen prod. integral in upper 100m
% jremin_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen remineralization integral in upper 100m
% f_n_100 [real(:,:),allocatable, private] :: zooplankton nitrogen biomass in upper 100m
% f_n [real(:,:,:),allocatable, private] :: zooplankton biomass
% jzloss_n [real(:,:,:),allocatable, private] :: Losses of n due to consumption by other zooplankton groups.
% jzloss_p [real(:,:,:),allocatable, private] :: Losses of p due to consumption by other zooplankton groups.
% jhploss_n [real(:,:,:),allocatable, private] :: Losses of n due to consumption by unresolved higher preds.
% jhploss_p [real(:,:,:),allocatable, private] :: Losses of p due to consumption by unresolved higher preds.
% jingest_n [real(:,:,:),allocatable, private] :: Total ingestion of n.
% jingest_p [real(:,:,:),allocatable, private] :: Total ingestion of p.
% jingest_sio2 [real(:,:,:),allocatable, private] :: Total ingestion of silicate.
% jingest_fe [real(:,:,:),allocatable, private] :: Total ingestion of iron.
% jprod_ndet [real(:,:,:),allocatable, private] :: production of nitrogen detritus by zooplankton group
% jprod_pdet [real(:,:,:),allocatable, private] :: production of phosphorous detritus by zooplankton group
% jprod_ldon [real(:,:,:),allocatable, private] :: production of labile dissolved organic N by zooplankton group
% jprod_ldop [real(:,:,:),allocatable, private] :: production of labile dissolved organic P by zooplankton group
% jprod_srdon [real(:,:,:),allocatable, private] :: production of semi-refractory dissolved organic N by zooplankton group
% jprod_srdop [real(:,:,:),allocatable, private] :: production of semi-refractory dissolved organic P by zooplankton group
% jprod_sldon [real(:,:,:),allocatable, private] :: production of semi-labile dissolved organic N by zooplankton group
% jprod_sldop [real(:,:,:),allocatable, private] :: production of semi-labile dissolved organic P by zooplankton group
% jprod_fed [real(:,:,:),allocatable, private] :: production of dissolved iron
% jprod_fedet [real(:,:,:),allocatable, private] :: production of iron detritus
% jprod_sidet [real(:,:,:),allocatable, private] :: production of silica detritus
% jprod_sio4 [real(:,:,:),allocatable, private] :: production of silicate via rapid dissolution at surface
% jprod_po4 [real(:,:,:),allocatable, private] :: phosphate production by zooplankton
% jprod_nh4 [real(:,:,:),allocatable, private] :: ammonia production by zooplankton
% jprod_n [real(:,:,:),allocatable, private] :: zooplankton production
% o2lim [real(:,:,:),allocatable, private] :: oxygen limitation of zooplankton activity
% temp_lim [real(:,:,:),allocatable, private] :: Temperature limitation.
% vmove [real(:,:,:),allocatable, private] :: Vertical movement.
% id_jzloss_n [integer,private] :: ID associated with diagnostics for losses of n due to consumption by other zooplankton groups.
% id_jzloss_p [integer,private] :: ID associated with diagnostics for losses of p due to consumption by other zooplankton groups.
% id_jhploss_n [integer,private] :: ID associated with diagnostics for losses of n due to consumption by unresolved higher preds.
% id_jhploss_p [integer,private] :: ID associated with diagnostics for losses of p due to consumption by unresolved higher preds.
% id_jingest_n [integer,private] :: ID associated with diagnostics for total ingestion of n.
% id_jingest_p [integer,private] :: ID associated with diagnostics for total ingestion of p.
% id_jingest_sio2 [integer,private] :: ID associated with diagnostics for total ingestion of silicate.
% id_jingest_fe [integer,private] :: ID associated with diagnostics for total ingestion of iron.
% id_jprod_ndet [integer,private] :: ID associated with diagnostics for production of nitrogen detritus by zooplankton group.
% id_jprod_pdet [integer,private] :: ID associated with diagnostics for production of phosphorous detritus by zooplankton group.
% id_jprod_ldon [integer,private] :: ID associated with diagnostics for production of labile dissolved organic N by zooplankton group.
% id_jprod_ldop [integer,private] :: ID associated with diagnostics for production of labile dissolved organic P by zooplankton group.
% id_jprod_srdon [integer,private] :: ID associated with diagnostics for production of semi-refractory dissolved organic N by zooplankton group.
% id_jprod_srdop [integer,private] :: ID associated with diagnostics for production of semi-refractory dissolved organic P by zooplankton group.
% id_jprod_sldon [integer,private] :: ID associated with diagnostics for production of semi-labile dissolved organic N by zooplankton group.
% id_jprod_sldop [integer,private] :: ID associated with diagnostics for production of semi-labile dissolved organic P by zooplankton group.
% id_jprod_fed [integer,private] :: ID associated with diagnostics for production of dissolved iron.
% id_jprod_fedet [integer,private] :: ID associated with diagnostics for production of iron detritus.
% id_jprod_sidet [integer,private] :: ID associated with diagnostics for production of silica detritus.
% id_jprod_sio4 [integer,private] :: ID associated with diagnostics for production of silicate via rapid dissolution at surface.
% id_jprod_po4 [integer,private] :: ID associated with diagnostics for phosphate production by zooplankton.
% id_jprod_nh4 [integer,private] :: ID associated with diagnostics for ammonia production by zooplankton.
% id_jprod_n [integer,private] :: ID associated with diagnostics for zooplankton production.
% id_o2lim [integer,private] :: ID associated with diagnostics for oxygen limitation of zooplankton activity.
% id_temp_lim [integer,private] :: ID associated with diagnostics for temperature limitation.
% id_vmove [integer,private] :: ID associated with diagnostics for vertical movement.
% id_jprod_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen prod. integral in upper 100m.
% id_jingest_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen ingestion integral in upper 100m.
% id_jzloss_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen loss to zooplankton integral in upper 100m.
% id_jhploss_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen loss to higher preds. integral in upper 100m.
% id_jprod_ndet_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen detritus prod. integral in upper 100m.
% id_jprod_don_100 [integer,private] :: ID associated with diagnostics for zooplankton dissolved org. nitrogen prod. integral in upper 100m.
% id_jremin_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen remineralization integral in upper 100m.
% id_f_n_100 [integer,private] :: ID associated with diagnostics for zooplankton nitrogen biomass in upper 100m.

type generic_cobalt/bacteria¶

bacteria data type

Type fields

% mu_max [real,private] :: maximum bacterial growth rate (sec-1)
% k_ldon [real,private] :: half-sat for nitrogen-limited growth (mmoles N m-3)
% gge_max [real,private] :: max gross growth efficiciency (dimensionless)
% amx_ge [real,private] :: growth efficiency due to anammox reaction (dimensionless)
% nitrif_ge [real,private] :: growth efficiency of nitrifying bacteria (dimensionless)
% bresp [real,private] :: basal respiration rate (sec-1)
% ktemp [real,private] :: temperature dependence of bacterial rates (C-1)
% vir [real,private] :: virus-driven loss rate for bacteria (sec-1 mmole N m-3)
% q_p_2_n [real,private] :: p:n ratio for bacteria
% jprod_n_100 [real(:,:),allocatable, private] :: Bacteria nitrogen prod. integral in upper 100m.
% jzloss_n_100 [real(:,:),allocatable, private] :: Bacteria nitrogen loss to zooplankton integral in upper 100m.
% jvirloss_n_100 [real(:,:),allocatable, private] :: Bacteria nitrogen loss to viruses integral in upper 100m.
% jremin_n_100 [real(:,:),allocatable, private] :: Bacteria nitrogen remineralization integral in upper 100m.
% juptake_ldon_100 [real(:,:),allocatable, private] :: Bacterial uptake of labile dissolved org. nitrogen in upper 100m.
% f_n_100 [real(:,:),allocatable, private] :: Bacterial nitrogen biomass in upper 100m.
% f_n [real(:,:,:),allocatable, private] :: bacteria biomass
% jzloss_n [real(:,:,:),allocatable, private] :: Losses of n due to consumption by zooplankton.
% jzloss_p [real(:,:,:),allocatable, private] :: Losses of p due to consumption by zooplankton.
% jhploss_n [real(:,:,:),allocatable, private] :: Losses of n due to consumption by unresolved higher preds.
% jhploss_p [real(:,:,:),allocatable, private] :: Losses of p due to consumption by unresolved higher preds.
% jvirloss_n [real(:,:,:),allocatable, private] :: nitrogen losses via viruses
% jvirloss_p [real(:,:,:),allocatable, private] :: phosphorous losses via viruses
% juptake_ldon [real(:,:,:),allocatable, private] :: Total uptake of ldon.
% juptake_ldop [real(:,:,:),allocatable, private] :: Total uptake of sldon.
% juptake_po4 [real(:,:,:),allocatable, private] :: phosphate uptake with anammox/nitrification
% jprod_nh4 [real(:,:,:),allocatable, private] :: production of ammonia bacteria
% jprod_po4 [real(:,:,:),allocatable, private] :: production of phosphate by bacteria
% jprod_n [real(:,:,:),allocatable, private] :: total free-living bacterial production
% jprod_n_het [real(:,:,:),allocatable, private] :: heterotrophic bacteria production
% jprod_n_amx [real(:,:,:),allocatable, private] :: anammox bacteria production
% jprod_n_nitrif [real(:,:,:),allocatable, private] :: nitrifying bacteria production
% mu_h [real(:,:,:),allocatable, private] :: growth rate of heterotrophic bacteria
% mu_cstar [real(:,:,:),allocatable, private] :: biomass turnover due to chemosynthesis
% bhet [real(:,:,:),allocatable, private] :: heterotrophic bacteria biomass
% ldonlim [real(:,:,:),allocatable, private] :: limitation due to organic substrate
% o2lim [real(:,:,:),allocatable, private] :: limitation due to oxygen
% temp_lim [real(:,:,:),allocatable, private] :: Temperature limitation.
% id_jzloss_n [integer,private] :: ID associated with diagnostics for losses of n due to consumption by zooplankton.
% id_jzloss_p [integer,private] :: ID associated with diagnostics for losses of p due to consumption by zooplankton.
% id_jhploss_n [integer,private] :: ID associated with diagnostics for losses of n due to consumption by unresolved higher preds.
% id_jhploss_p [integer,private] :: ID associated with diagnostics for losses of p due to consumption by unresolved higher preds.
% id_jvirloss_n [integer,private] :: ID associated with diagnostics for nitrogen losses via viruses.
% id_jvirloss_p [integer,private] :: ID associated with diagnostics for phosphorous losses via viruses.
% id_juptake_ldon [integer,private] :: ID associated with diagnostics for total uptake of ldon.
% id_juptake_ldop [integer,private] :: ID associated with diagnostics for total uptake of sldon.
% id_juptake_po4 [integer,private] :: ID associated with diagnostics for phosphate uptake with anammox/nitrification.
% id_jprod_nh4 [integer,private] :: ID associated with diagnostics for production of ammonia bacteria.
% id_jprod_po4 [integer,private] :: ID associated with diagnostics for production of phosphate by bacteria.
% id_jprod_n [integer,private] :: ID associated with diagnostics for total free-living bacterial production.
% id_jprod_n_het [integer,private] :: ID associated with diagnostics for heterotrophic bacteria production.
% id_jprod_n_amx [integer,private] :: ID associated with diagnostics for anammox bacteria production.
% id_jprod_n_nitrif [integer,private] :: ID associated with diagnostics for nitrifying bacteria production.
% id_mu_h [integer,private] :: ID associated with diagnostics for growth rate of heterotrophic bacteria.
% id_mu_cstar [integer,private] :: ID associated with diagnostics for biomass turnover due to chemosynthesis.
% id_bhet [integer,private] :: ID associated with diagnostics for heterotrophic bacteria biomass.
% id_temp_lim [integer,private] :: ID associated with diagnostics for temperature limitation.
% id_o2lim [integer,private] :: ID associated with diagnostics for limitation due to oxygen.
% id_ldonlim [integer,private] :: ID associated with diagnostics for limitation due to organic substrate.
% id_jprod_n_100 [integer,private] :: ID associated with diagnostics for bacteria nitrogen prod. integral in upper 100m.
% id_jzloss_n_100 [integer,private] :: ID associated with diagnostics for bacteria nitrogen loss to zooplankton integral in upper 100m.
% id_jvirloss_n_100 [integer,private] :: ID associated with diagnostics for bacteria nitrogen loss to viruses integral in upper 100m.
% id_jremin_n_100 [integer,private] :: ID associated with diagnostics for bacteria nitrogen remineralization integral in upper 100m.
% id_juptake_ldon_100 [integer,private] :: ID associated with diagnostics for bacterial uptake of labile dissolved org. nitrogen in upper 100m
% id_f_n_100 [integer,private] :: ID associated with diagnostics for bacterial nitrogen biomass in upper 100m.

type generic_cobalt/generic_cobalt_type¶

data type for other variables used in generic_cobalt() module module

Type fields

% init [logical,private]
% force_update_fluxes [logical,private]
% p_2_n_static [logical,private]
% cased_steady [logical,private]
% tracer_debug [logical,private]
% atm_co2_flux [real,private]
% c_2_n [real,private]
% ca_2_n_arag [real,private]
% ca_2_n_calc [real,private]
% caco3_sat_max [real,private]
% doc_background [real,private]
% fe_2_n_upt_fac [real,private]
% fe_2_n_sed [real,private]
% ffe_sed_max [real,private]
% ffe_geotherm_ratio [real,private]
% jfe_iceberg_ratio [real,private]
% jno3_iceberg_ratio [real,private]
% jpo4_iceberg_ratio [real,private]
% fe_coast [real,private]
% felig_2_don [real,private]
% felig_bkg [real,private]
% gamma_cadet_arag [real,private]
% gamma_cadet_calc [real,private]
% par_adj [real,private]
% gamma_irr_aclm [real,private]
% ml_aclm_efold [real,private]
% zmld_ref [real,private]
% densdiff_mld [real,private]
% irrad_day_thresh [real,private]
% min_daylength [real,private]
% gamma_irr_mem_dp [real,private]
% gamma_mu_mem [real,private]
% irr_mem_dpthresh1 [real,private]
% irr_mem_dpthresh2 [real,private]
% dpause_max [real,private]
% gamma_ndet [real,private]
% gamma_nitrif [real,private]
% k_nh3_nitrif [real,private]
% gamma_sidet [real,private]
% gamma_srdon [real,private]
% gamma_srdop [real,private]
% gamma_sldon [real,private]
% gamma_sldop [real,private]
% gamma_nh4amx [real,private]
% kappa_sidet [real,private]
% irr_inhibit [real,private]
% k_n_inhib_di [real,private]
% k_o2 [real,private]
% k_o2_nit [real,private]
% kappa_eppley [real,private]
% kappa_remin [real,private]
% remin_ramp_scale [real,private]
% kfe_eq_lig_hl [real,private]
% kfe_eq_lig_ll [real,private]
% alpha_fescav [real,private]
% beta_fescav [real,private]
% io_fescav [real,private]
% remin_eff_fedet [real,private]
% half_life_14c [real,private]
% lambda_14c [real,private]
% k_lith [real,private]
% phi_lith [real,private]
% alk_2_n_denit [real,private]
% n_2_n_denit [real,private]
% k_no3_denit [real,private]
% no3_2_nh4_amx [real,private]
% alk_2_nh4_amx [real,private]
% z_burial [real,private]
% phi_surfresp_cased [real,private]
% phi_deepresp_cased [real,private]
% alpha_cased [real,private]
% beta_cased [real,private]
% gamma_cased [real,private]
% co_cased [real,private]
% o2_min [real,private]
% o2_min_amx [real,private]
% o2_min_nit [real,private]
% o2_2_nfix [real,private]
% o2_2_nh4 [real,private]
% o2_2_no3 [real,private]
% o2_2_nitrif [real,private]
% o2_inhib_di_pow [real,private]
% o2_inhib_di_sat [real,private]
% rpcaco3 [real,private]
% rplith [real,private]
% rpsio2 [real,private]
% thetamin [real,private]
% vir_ktemp [real,private]
% lysis_phi_ldon [real,private]
% lysis_phi_srdon [real,private]
% lysis_phi_sldon [real,private]
% lysis_phi_ldop [real,private]
% lysis_phi_srdop [real,private]
% lysis_phi_sldop [real,private]
% wsink [real,private]
% bottom_thickness [real,private]
% z_sed [real,private]
% zeta [real,private]
% refuge_conc [real,private]
% imax_hp [real,private]
% ki_hp [real,private]
% ktemp_hp [real,private]
% coef_hp [real,private]
% nswitch_hp [real,private]
% mswitch_hp [real,private]
% hp_ipa_smp [real,private]
% hp_ipa_mdp [real,private]
% hp_ipa_lgp [real,private]
% hp_ipa_diaz [real,private]
% hp_ipa_bact [real,private]
% hp_ipa_smz [real,private]
% hp_ipa_mdz [real,private]
% hp_ipa_lgz [real,private]
% hp_ipa_det [real,private]
% hp_phi_det [real,private]
% total_atm_co2 [real(3),private]
% htotal_scale_lo [real,private]
% htotal_scale_hi [real,private]
% htotal_in [real,private]
% rho_0 [real,private]
% a_0 [real,private]
% a_1 [real,private]
% a_2 [real,private]
% a_3 [real,private]
% a_4 [real,private]
% a_5 [real,private]
% b_0 [real,private]
% b_1 [real,private]
% b_2 [real,private]
% b_3 [real,private]
% c_0 [real,private]
% a1_co2 [real,private]
% a2_co2 [real,private]
% a3_co2 [real,private]
% a4_co2 [real,private]
% a5_co2 [real,private]
% a1_o2 [real,private]
% a2_o2 [real,private]
% a3_o2 [real,private]
% a4_o2 [real,private]
% a5_o2 [real,private]
% mask_z_sat_arag [logical(:,:),allocatable, private]
% mask_z_sat_calc [logical(:,:),allocatable, private]
% f_alk [real(:,:,:),allocatable, private]
% f_cadet_arag [real(:,:,:),allocatable, private]
% f_cadet_calc [real(:,:,:),allocatable, private]
% f_dic [real(:,:,:),allocatable, private]
% f_fed [real(:,:,:),allocatable, private]
% f_fedet [real(:,:,:),allocatable, private]
% f_ldon [real(:,:,:),allocatable, private]
% f_ldop [real(:,:,:),allocatable, private]
% f_lith [real(:,:,:),allocatable, private]
% f_lithdet [real(:,:,:),allocatable, private]
% f_ndet [real(:,:,:),allocatable, private]
% f_nh4 [real(:,:,:),allocatable, private]
% f_no3 [real(:,:,:),allocatable, private]
% f_o2 [real(:,:,:),allocatable, private]
% f_pdet [real(:,:,:),allocatable, private]
% f_po4 [real(:,:,:),allocatable, private]
% f_srdon [real(:,:,:),allocatable, private]
% f_srdop [real(:,:,:),allocatable, private]
% f_sldon [real(:,:,:),allocatable, private]
% f_sldop [real(:,:,:),allocatable, private]
% f_sidet [real(:,:,:),allocatable, private]
% f_simd [real(:,:,:),allocatable, private]
% f_silg [real(:,:,:),allocatable, private]
% f_sio4 [real(:,:,:),allocatable, private]
% co3_sol_arag [real(:,:,:),allocatable, private]
% co3_sol_calc [real(:,:,:),allocatable, private]
% rho_test [real(:,:,:),allocatable, private]
% f_chl [real(:,:,:),allocatable, private]
% f_nh3 [real(:,:,:),allocatable, private]
% f_co3_ion [real(:,:,:),allocatable, private]
% f_htotal [real(:,:,:),allocatable, private]
% f_irr_aclm [real(:,:,:),allocatable, private]
% f_irr_aclm_z [real(:,:,:),allocatable, private]
% f_irr_aclm_sfc [real(:,:,:),allocatable, private]
% f_irr_mem_dp [real(:,:,:),allocatable, private]
% f_cased [real(:,:,:),allocatable, private]
% f_cadet_arag_btf [real(:,:,:),allocatable, private]
% f_cadet_calc_btf [real(:,:,:),allocatable, private]
% f_fedet_btf [real(:,:,:),allocatable, private]
% f_lithdet_btf [real(:,:,:),allocatable, private]
% f_ndet_btf [real(:,:,:),allocatable, private]
% f_pdet_btf [real(:,:,:),allocatable, private]
% f_sidet_btf [real(:,:,:),allocatable, private]
% f_nsm_btf [real(:,:,:),allocatable, private]
% f_nmd_btf [real(:,:,:),allocatable, private]
% f_nlg_btf [real(:,:,:),allocatable, private]
% f_ndi_btf [real(:,:,:),allocatable, private]
% f_simd_btf [real(:,:,:),allocatable, private]
% f_silg_btf [real(:,:,:),allocatable, private]
% f_fesm_btf [real(:,:,:),allocatable, private]
% f_femd_btf [real(:,:,:),allocatable, private]
% f_felg_btf [real(:,:,:),allocatable, private]
% f_fedi_btf [real(:,:,:),allocatable, private]
% f_psm_btf [real(:,:,:),allocatable, private]
% f_pmd_btf [real(:,:,:),allocatable, private]
% f_plg_btf [real(:,:,:),allocatable, private]
% f_pdi_btf [real(:,:,:),allocatable, private]
% jnbact [real(:,:,:),allocatable, private]
% jndi [real(:,:,:),allocatable, private]
% jnsm [real(:,:,:),allocatable, private]
% jnmd [real(:,:,:),allocatable, private]
% jnlg [real(:,:,:),allocatable, private]
% jnsmz [real(:,:,:),allocatable, private]
% jnmdz [real(:,:,:),allocatable, private]
% jnlgz [real(:,:,:),allocatable, private]
% jalk [real(:,:,:),allocatable, private]
% jalk_plus_btm [real(:,:,:),allocatable, private]
% jcadet_arag [real(:,:,:),allocatable, private]
% jcadet_calc [real(:,:,:),allocatable, private]
% jdic [real(:,:,:),allocatable, private]
% jdic_plus_btm [real(:,:,:),allocatable, private]
% jdin_plus_btm [real(:,:,:),allocatable, private]
% jfed [real(:,:,:),allocatable, private]
% jfed_plus_btm [real(:,:,:),allocatable, private]
% jfedi [real(:,:,:),allocatable, private]
% jfesm [real(:,:,:),allocatable, private]
% jfemd [real(:,:,:),allocatable, private]
% jfelg [real(:,:,:),allocatable, private]
% jpdi [real(:,:,:),allocatable, private]
% jpsm [real(:,:,:),allocatable, private]
% jpmd [real(:,:,:),allocatable, private]
% jplg [real(:,:,:),allocatable, private]
% jfedet [real(:,:,:),allocatable, private]
% jldon [real(:,:,:),allocatable, private]
% jldop [real(:,:,:),allocatable, private]
% jlith [real(:,:,:),allocatable, private]
% jlithdet [real(:,:,:),allocatable, private]
% jndet [real(:,:,:),allocatable, private]
% jnh4 [real(:,:,:),allocatable, private]
% jnh4_plus_btm [real(:,:,:),allocatable, private]
% jno3 [real(:,:,:),allocatable, private]
% jno3_plus_btm [real(:,:,:),allocatable, private]
% jo2 [real(:,:,:),allocatable, private]
% jo2_plus_btm [real(:,:,:),allocatable, private]
% jpdet [real(:,:,:),allocatable, private]
% jpo4 [real(:,:,:),allocatable, private]
% jpo4_plus_btm [real(:,:,:),allocatable, private]
% jsrdon [real(:,:,:),allocatable, private]
% jsrdop [real(:,:,:),allocatable, private]
% jsldon [real(:,:,:),allocatable, private]
% jsldop [real(:,:,:),allocatable, private]
% jsidet [real(:,:,:),allocatable, private]
% jsimd [real(:,:,:),allocatable, private]
% jsilg [real(:,:,:),allocatable, private]
% jsio4 [real(:,:,:),allocatable, private]
% jsio4_plus_btm [real(:,:,:),allocatable, private]
% jprod_ndet [real(:,:,:),allocatable, private]
% jprod_pdet [real(:,:,:),allocatable, private]
% jprod_ldon [real(:,:,:),allocatable, private]
% jprod_ldop [real(:,:,:),allocatable, private]
% jprod_sldon [real(:,:,:),allocatable, private]
% jprod_sldop [real(:,:,:),allocatable, private]
% jprod_srdon [real(:,:,:),allocatable, private]
% jprod_srdop [real(:,:,:),allocatable, private]
% jprod_fed [real(:,:,:),allocatable, private]
% jprod_fedet [real(:,:,:),allocatable, private]
% jprod_sidet [real(:,:,:),allocatable, private]
% jprod_sio4 [real(:,:,:),allocatable, private]
% jprod_lithdet [real(:,:,:),allocatable, private]
% jprod_cadet_arag [real(:,:,:),allocatable, private]
% jprod_cadet_calc [real(:,:,:),allocatable, private]
% jprod_nh4 [real(:,:,:),allocatable, private]
% jprod_nh4_plus_btm [real(:,:,:),allocatable, private]
% jprod_po4 [real(:,:,:),allocatable, private]
% net_phyto_resp [real(:,:,:),allocatable, private]
% det_jzloss_n [real(:,:,:),allocatable, private]
% det_jzloss_p [real(:,:,:),allocatable, private]
% det_jzloss_fe [real(:,:,:),allocatable, private]
% det_jzloss_si [real(:,:,:),allocatable, private]
% det_jhploss_n [real(:,:,:),allocatable, private]
% det_jhploss_p [real(:,:,:),allocatable, private]
% det_jhploss_fe [real(:,:,:),allocatable, private]
% det_jhploss_si [real(:,:,:),allocatable, private]
% jdiss_cadet_arag [real(:,:,:),allocatable, private]
% jdiss_cadet_arag_plus_btm [real(:,:,:),allocatable, private]
% jdiss_cadet_calc [real(:,:,:),allocatable, private]
% jdiss_cadet_calc_plus_btm [real(:,:,:),allocatable, private]
% jdiss_sidet [real(:,:,:),allocatable, private]
% jremin_ndet [real(:,:,:),allocatable, private]
% jremin_pdet [real(:,:,:),allocatable, private]
% jremin_fedet [real(:,:,:),allocatable, private]
% jfe_ads [real(:,:,:),allocatable, private]
% jfe_coast [real(:,:,:),allocatable, private]
% jfe_iceberg [real(:,:,:),allocatable, private]
% jno3_iceberg [real(:,:,:),allocatable, private]
% jpo4_iceberg [real(:,:,:),allocatable, private]
% kfe_eq_lig [real(:,:,:),allocatable, private]
% feprime [real(:,:,:),allocatable, private]
% ligand [real(:,:,:),allocatable, private]
% fe_sol [real(:,:,:),allocatable, private]
% expkt [real(:,:,:),allocatable, private]
% expkremint [real(:,:,:),allocatable, private]
% hp_temp_lim [real(:,:,:),allocatable, private]
% hp_o2lim [real(:,:,:),allocatable, private]
% hp_jingest_n [real(:,:,:),allocatable, private]
% hp_jingest_p [real(:,:,:),allocatable, private]
% hp_jingest_fe [real(:,:,:),allocatable, private]
% hp_jingest_sio2 [real(:,:,:),allocatable, private]
% irr_inst [real(:,:,:),allocatable, private]
% irr_mix [real(:,:,:),allocatable, private]
% irr_aclm_inst [real(:,:,:),allocatable, private]
% chl2sfcchl [real(:,:,:),allocatable, private]
% jno3denit_wc [real(:,:,:),allocatable, private]
% juptake_no3amx [real(:,:,:),allocatable, private]
% juptake_nh4amx [real(:,:,:),allocatable, private]
% jprod_n2amx [real(:,:,:),allocatable, private]
% juptake_nh4nitrif [real(:,:,:),allocatable, private]
% jprod_no3nitrif [real(:,:,:),allocatable, private]
% jo2resp_wc [real(:,:,:),allocatable, private]
% omega_arag [real(:,:,:),allocatable, private]
% omega_calc [real(:,:,:),allocatable, private]
% omegaa [real(:,:,:),allocatable, private]
% omegac [real(:,:,:),allocatable, private]
% fntot [real(:,:,:),allocatable, private]
% fptot [real(:,:,:),allocatable, private]
% ffetot [real(:,:,:),allocatable, private]
% fsitot [real(:,:,:),allocatable, private]
% tot_layer_int_c [real(:,:,:),allocatable, private]
% tot_layer_int_fe [real(:,:,:),allocatable, private]
% tot_layer_int_n [real(:,:,:),allocatable, private]
% tot_layer_int_p [real(:,:,:),allocatable, private]
% tot_layer_int_si [real(:,:,:),allocatable, private]
% tot_layer_int_o2 [real(:,:,:),allocatable, private]
% tot_layer_int_alk [real(:,:,:),allocatable, private]
% total_filter_feeding [real(:,:,:),allocatable, private]
% nmd_diatoms [real(:,:,:),allocatable, private]
% nlg_diatoms [real(:,:,:),allocatable, private]
% q_si_2_n_md_diatoms [real(:,:,:),allocatable, private]
% q_si_2_n_lg_diatoms [real(:,:,:),allocatable, private]
% zt [real(:,:,:),allocatable, private]
% c14_2_n [real(:,:,:),allocatable, private]
% f_di14c [real(:,:,:),allocatable, private]
% f_do14c [real(:,:,:),allocatable, private]
% fpo14c [real(:,:,:),allocatable, private]
% j14c_decay_dic [real(:,:,:),allocatable, private]
% j14c_decay_doc [real(:,:,:),allocatable, private]
% j14c_reminp [real(:,:,:),allocatable, private]
% jdi14c [real(:,:,:),allocatable, private]
% jdo14c [real(:,:,:),allocatable, private]
% dissoc [real(:,:,:),allocatable, private]
% o2sat [real(:,:,:),allocatable, private]
% remoc [real(:,:,:),allocatable, private]
% tot_layer_int_doc [real(:,:,:),allocatable, private]
% tot_layer_int_poc [real(:,:,:),allocatable, private]
% tot_layer_int_dic [real(:,:,:),allocatable, private]
% b_alk [real(:,:),allocatable, private]
% b_dic [real(:,:),allocatable, private]
% b_fed [real(:,:),allocatable, private]
% b_nh4 [real(:,:),allocatable, private]
% b_no3 [real(:,:),allocatable, private]
% b_o2 [real(:,:),allocatable, private]
% b_po4 [real(:,:),allocatable, private]
% b_sio4 [real(:,:),allocatable, private]
% b_di14c [real(:,:),allocatable, private]
% co2_csurf [real(:,:),allocatable, private]
% pco2_csurf [real(:,:),allocatable, private]
% co2_alpha [real(:,:),allocatable, private]
% c14o2_csurf [real(:,:),allocatable, private]
% c14o2_alpha [real(:,:),allocatable, private]
% nh3_csurf [real(:,:),allocatable, private]
% nh3_alpha [real(:,:),allocatable, private]
% pnh3_csurf [real(:,:),allocatable, private]
% fcadet_arag_btm [real(:,:),allocatable, private]
% fcadet_calc_btm [real(:,:),allocatable, private]
% ffedet_btm [real(:,:),allocatable, private]
% flithdet_btm [real(:,:),allocatable, private]
% fpdet_btm [real(:,:),allocatable, private]
% fndet_btm [real(:,:),allocatable, private]
% fsidet_btm [real(:,:),allocatable, private]
% fntot_btm [real(:,:),allocatable, private]
% fptot_btm [real(:,:),allocatable, private]
% ffetot_btm [real(:,:),allocatable, private]
% fsitot_btm [real(:,:),allocatable, private]
% fcased_burial [real(:,:),allocatable, private]
% fcased_redis [real(:,:),allocatable, private]
% fcased_redis_surfresp [real(:,:),allocatable, private]
% cased_redis_coef [real(:,:),allocatable, private]
% cased_redis_delz [real(:,:),allocatable, private]
% ffe_sed [real(:,:),allocatable, private]
% ffe_geotherm [real(:,:),allocatable, private]
% ffe_iceberg [real(:,:),allocatable, private]
% fnfeso4red_sed [real(:,:),allocatable, private]
% fno3denit_sed [real(:,:),allocatable, private]
% fnoxic_sed [real(:,:),allocatable, private]
% frac_burial [real(:,:),allocatable, private]
% fn_burial [real(:,:),allocatable, private]
% fp_burial [real(:,:),allocatable, private]
% jprod_allphytos_100 [real(:,:),allocatable, private]
% jprod_allphytos_200 [real(:,:),allocatable, private]
% jprod_diat_100 [real(:,:),allocatable, private]
% mld_aclm [real(:,:),allocatable, private]
% htotallo [real(:,:),allocatable, private]
% htotalhi [real(:,:),allocatable, private]
% hp_jingest_n_100 [real(:,:),allocatable, private]
% hp_jremin_n_100 [real(:,:),allocatable, private]
% hp_jprod_ndet_100 [real(:,:),allocatable, private]
% jprod_lithdet_100 [real(:,:),allocatable, private]
% jprod_sidet_100 [real(:,:),allocatable, private]
% jprod_cadet_calc_100 [real(:,:),allocatable, private]
% jprod_cadet_arag_100 [real(:,:),allocatable, private]
% jprod_mesozoo_200 [real(:,:),allocatable, private]
% jremin_ndet_100 [real(:,:),allocatable, private]
% f_ndet_100 [real(:,:),allocatable, private]
% f_don_100 [real(:,:),allocatable, private]
% f_simd_100 [real(:,:),allocatable, private]
% f_silg_100 [real(:,:),allocatable, private]
% f_mesozoo_200 [real(:,:),allocatable, private]
% fndet_100 [real(:,:),allocatable, private]
% fpdet_100 [real(:,:),allocatable, private]
% fsidet_100 [real(:,:),allocatable, private]
% fcadet_calc_100 [real(:,:),allocatable, private]
% fcadet_arag_100 [real(:,:),allocatable, private]
% ffedet_100 [real(:,:),allocatable, private]
% flithdet_100 [real(:,:),allocatable, private]
% fntot_100 [real(:,:),allocatable, private]
% fptot_100 [real(:,:),allocatable, private]
% fsitot_100 [real(:,:),allocatable, private]
% ffetot_100 [real(:,:),allocatable, private]
% btm_temp [real(:,:),allocatable, private]
% btm_temp_old [real(:,:),allocatable, private]
% btm_o2_old [real(:,:),allocatable, private]
% btm_o2 [real(:,:),allocatable, private]
% btm_no3 [real(:,:),allocatable, private]
% btm_alk [real(:,:),allocatable, private]
% btm_dic [real(:,:),allocatable, private]
% grid_kmt_diag [real(:,:),allocatable, private]
% k_bot_diag [real(:,:),allocatable, private]
% rho_dzt_kmt_diag [real(:,:),allocatable, private]
% rho_dzt_bot_diag [real(:,:),allocatable, private]
% btm_htotal [real(:,:),allocatable, private]
% btm_htotal_old [real(:,:),allocatable, private]
% btm_co3_ion [real(:,:),allocatable, private]
% btm_co3_ion_old [real(:,:),allocatable, private]
% btm_co3_sol_arag [real(:,:),allocatable, private]
% btm_co3_sol_arag_old [real(:,:),allocatable, private]
% btm_co3_sol_calc [real(:,:),allocatable, private]
% btm_co3_sol_calc_old [real(:,:),allocatable, private]
% btm_omega_calc [real(:,:),allocatable, private]
% btm_omega_arag [real(:,:),allocatable, private]
% cased_2d [real(:,:),allocatable, private]
% o2min [real(:,:),allocatable, private]
% z_o2min [real(:,:),allocatable, private]
% z_sat_arag [real(:,:),allocatable, private]
% z_sat_calc [real(:,:),allocatable, private]
% dp_fac [real(:,:),allocatable, private]
% daylength [real(:,:),allocatable, private]
% f_alk_int_100 [real(:,:),allocatable, private]
% f_dic_int_100 [real(:,:),allocatable, private]
% f_din_int_100 [real(:,:),allocatable, private]
% f_fed_int_100 [real(:,:),allocatable, private]
% f_po4_int_100 [real(:,:),allocatable, private]
% f_sio4_int_100 [real(:,:),allocatable, private]
% jalk_100 [real(:,:),allocatable, private]
% jdic_100 [real(:,:),allocatable, private]
% jdin_100 [real(:,:),allocatable, private]
% jfed_100 [real(:,:),allocatable, private]
% jpo4_100 [real(:,:),allocatable, private]
% jsio4_100 [real(:,:),allocatable, private]
% jprod_ptot_100 [real(:,:),allocatable, private]
% wc_vert_int_c [real(:,:),allocatable, private]
% wc_vert_int_dic [real(:,:),allocatable, private]
% wc_vert_int_doc [real(:,:),allocatable, private]
% wc_vert_int_poc [real(:,:),allocatable, private]
% wc_vert_int_n [real(:,:),allocatable, private]
% wc_vert_int_p [real(:,:),allocatable, private]
% wc_vert_int_fe [real(:,:),allocatable, private]
% wc_vert_int_si [real(:,:),allocatable, private]
% wc_vert_int_o2 [real(:,:),allocatable, private]
% wc_vert_int_alk [real(:,:),allocatable, private]
% wc_vert_int_chemoautopp [real(:,:),allocatable, private]
% wc_vert_int_net_phyto_resp [real(:,:),allocatable, private]
% wc_vert_int_npp [real(:,:),allocatable, private]
% wc_vert_int_jdiss_sidet [real(:,:),allocatable, private]
% wc_vert_int_jdiss_cadet [real(:,:),allocatable, private]
% wc_vert_int_jo2resp [real(:,:),allocatable, private]
% wc_vert_int_jprod_cadet [real(:,:),allocatable, private]
% wc_vert_int_jno3denit [real(:,:),allocatable, private]
% wc_vert_int_jprod_no3nitrif [real(:,:),allocatable, private]
% wc_vert_int_juptake_nh4 [real(:,:),allocatable, private]
% wc_vert_int_jprod_nh4 [real(:,:),allocatable, private]
% wc_vert_int_juptake_no3 [real(:,:),allocatable, private]
% wc_vert_int_nfix [real(:,:),allocatable, private]
% wc_vert_int_jprod_n2amx [real(:,:),allocatable, private]
% wc_vert_int_jfe_iceberg [real(:,:),allocatable, private]
% wc_vert_int_jno3_iceberg [real(:,:),allocatable, private]
% wc_vert_int_jpo4_iceberg [real(:,:),allocatable, private]
% p_alk [real(:,:,:,:),pointer, private]
% p_cadet_arag [real(:,:,:,:),pointer, private]
% p_cadet_calc [real(:,:,:,:),pointer, private]
% p_dic [real(:,:,:,:),pointer, private]
% p_di14c [real(:,:,:,:),pointer, private]
% p_do14c [real(:,:,:,:),pointer, private]
% p_fed [real(:,:,:,:),pointer, private]
% p_fedet [real(:,:,:,:),pointer, private]
% p_fedi [real(:,:,:,:),pointer, private]
% p_felg [real(:,:,:,:),pointer, private]
% p_femd [real(:,:,:,:),pointer, private]
% p_fesm [real(:,:,:,:),pointer, private]
% p_pdi [real(:,:,:,:),pointer, private]
% p_plg [real(:,:,:,:),pointer, private]
% p_pmd [real(:,:,:,:),pointer, private]
% p_psm [real(:,:,:,:),pointer, private]
% p_ldon [real(:,:,:,:),pointer, private]
% p_ldop [real(:,:,:,:),pointer, private]
% p_lith [real(:,:,:,:),pointer, private]
% p_lithdet [real(:,:,:,:),pointer, private]
% p_nbact [real(:,:,:,:),pointer, private]
% p_ndet [real(:,:,:,:),pointer, private]
% p_ndi [real(:,:,:,:),pointer, private]
% p_nlg [real(:,:,:,:),pointer, private]
% p_nmd [real(:,:,:,:),pointer, private]
% p_nsm [real(:,:,:,:),pointer, private]
% p_nh4 [real(:,:,:,:),pointer, private]
% p_no3 [real(:,:,:,:),pointer, private]
% p_o2 [real(:,:,:,:),pointer, private]
% p_pdet [real(:,:,:,:),pointer, private]
% p_po4 [real(:,:,:,:),pointer, private]
% p_srdon [real(:,:,:,:),pointer, private]
% p_srdop [real(:,:,:,:),pointer, private]
% p_sldon [real(:,:,:,:),pointer, private]
% p_sldop [real(:,:,:,:),pointer, private]
% p_sidet [real(:,:,:,:),pointer, private]
% p_silg [real(:,:,:,:),pointer, private]
% p_simd [real(:,:,:,:),pointer, private]
% p_sio4 [real(:,:,:,:),pointer, private]
% p_nsmz [real(:,:,:,:),pointer, private]
% p_nmdz [real(:,:,:,:),pointer, private]
% p_nlgz [real(:,:,:,:),pointer, private]
% runoff_flux_alk [real(:,:),allocatable, private]
% runoff_flux_dic [real(:,:),allocatable, private]
% runoff_flux_di14c [real(:,:),allocatable, private]
% runoff_flux_lith [real(:,:),allocatable, private]
% runoff_flux_fed [real(:,:),allocatable, private]
% runoff_flux_no3 [real(:,:),allocatable, private]
% runoff_flux_ldon [real(:,:),allocatable, private]
% runoff_flux_sldon [real(:,:),allocatable, private]
% runoff_flux_srdon [real(:,:),allocatable, private]
% runoff_flux_ndet [real(:,:),allocatable, private]
% runoff_flux_pdet [real(:,:),allocatable, private]
% runoff_flux_po4 [real(:,:),allocatable, private]
% runoff_flux_ldop [real(:,:),allocatable, private]
% runoff_flux_sldop [real(:,:),allocatable, private]
% runoff_flux_srdop [real(:,:),allocatable, private]
% dry_fed [real(:,:),allocatable, private]
% wet_fed [real(:,:),allocatable, private]
% dry_lith [real(:,:),allocatable, private]
% wet_lith [real(:,:),allocatable, private]
% dry_no3 [real(:,:),allocatable, private]
% wet_no3 [real(:,:),allocatable, private]
% dry_nh4 [real(:,:),allocatable, private]
% wet_nh4 [real(:,:),allocatable, private]
% dry_po4 [real(:,:),allocatable, private]
% wet_po4 [real(:,:),allocatable, private]
% stf_gas_dic [real(:,:),allocatable, private]
% stf_gas_o2 [real(:,:),allocatable, private]
% deltap_dic [real(:,:),allocatable, private]
% deltap_o2 [real(:,:),allocatable, private]
% nkml [integer,private]
% numlightadapt [integer,private]
% file [character(len=fm_string_len),private]
% ice_restart_file [character(len=fm_string_len),private]
% ocean_restart_file [character(len=fm_string_len),private]
% ic_file [character(len=fm_string_len),private]
% id_ndi [integer,private]
% id_nlg [integer,private]
% id_nmd [integer,private]
% id_nsm [integer,private]
% id_nsmz [integer,private]
% id_nmdz [integer,private]
% id_nlgz [integer,private]
% id_nbact [integer,private]
% id_alk [integer,private]
% id_cadet_arag [integer,private]
% id_cadet_calc [integer,private]
% id_dic [integer,private]
% id_fed [integer,private]
% id_fedet [integer,private]
% id_fedi [integer,private]
% id_felg [integer,private]
% id_femd [integer,private]
% id_fesm [integer,private]
% id_pdi [integer,private]
% id_plg [integer,private]
% id_pmd [integer,private]
% id_psm [integer,private]
% id_ldon [integer,private]
% id_ldop [integer,private]
% id_lith [integer,private]
% id_lithdet [integer,private]
% id_ndet [integer,private]
% id_nh4 [integer,private]
% id_no3 [integer,private]
% id_o2 [integer,private]
% id_pdet [integer,private]
% id_po4 [integer,private]
% id_srdop [integer,private]
% id_srdon [integer,private]
% id_sldon [integer,private]
% id_sldop [integer,private]
% id_sidet [integer,private]
% id_silg [integer,private]
% id_simd [integer,private]
% id_sio4 [integer,private]
% id_co3_sol_arag [integer,private]
% id_co3_sol_calc [integer,private]
% id_rho_test [integer,private]
% id_dep_dry_fed [integer,private]
% id_dep_dry_nh4 [integer,private]
% id_dep_dry_no3 [integer,private]
% id_dep_dry_po4 [integer,private]
% id_dep_wet_fed [integer,private]
% id_dep_wet_nh4 [integer,private]
% id_dep_wet_no3 [integer,private]
% id_dep_wet_po4 [integer,private]
% id_dep_wet_lith [integer,private]
% id_dep_dry_lith [integer,private]
% id_omega_arag [integer,private]
% id_omega_calc [integer,private]
% id_chl [integer,private]
% id_co3_ion [integer,private]
% id_htotal [integer,private]
% id_irr_aclm [integer,private]
% id_irr_aclm_z [integer,private]
% id_irr_mem_dp [integer,private]
% id_cased [integer,private]
% id_cadet_arag_btf [integer,private]
% id_cadet_calc_btf [integer,private]
% id_fedet_btf [integer,private]
% id_lithdet_btf [integer,private]
% id_ndet_btf [integer,private]
% id_pdet_btf [integer,private]
% id_sidet_btf [integer,private]
% id_jfed [integer,private]
% id_jfedc [integer,private]
% id_jprod_ndet [integer,private]
% id_jprod_pdet [integer,private]
% id_jprod_sldon [integer,private]
% id_jprod_ldon [integer,private]
% id_jprod_srdon [integer,private]
% id_jprod_sldop [integer,private]
% id_jprod_ldop [integer,private]
% id_jprod_srdop [integer,private]
% id_jprod_fed [integer,private]
% id_jprod_fedet [integer,private]
% id_jprod_sidet [integer,private]
% id_jprod_sio4 [integer,private]
% id_jprod_lithdet [integer,private]
% id_jprod_cadet_arag [integer,private]
% id_jprod_cadet_calc [integer,private]
% id_jprod_po4 [integer,private]
% id_jprod_nh4 [integer,private]
% id_jprod_nh4_plus_btm [integer,private]
% id_net_phyto_resp [integer,private]
% id_det_jzloss_n [integer,private]
% id_det_jzloss_p [integer,private]
% id_det_jzloss_fe [integer,private]
% id_det_jzloss_si [integer,private]
% id_det_jhploss_n [integer,private]
% id_det_jhploss_p [integer,private]
% id_det_jhploss_fe [integer,private]
% id_det_jhploss_si [integer,private]
% id_jdiss_sidet [integer,private]
% id_jdiss_cadet_arag [integer,private]
% id_jdiss_cadet_arag_plus_btm [integer,private]
% id_jdiss_cadet_calc [integer,private]
% id_jdiss_cadet_calc_plus_btm [integer,private]
% id_jremin_ndet [integer,private]
% id_jremin_pdet [integer,private]
% id_jremin_fedet [integer,private]
% id_jfe_ads [integer,private]
% id_jfe_coast [integer,private]
% id_jfe_iceberg [integer,private]
% id_jno3_iceberg [integer,private]
% id_jpo4_iceberg [integer,private]
% id_kfe_eq_lig [integer,private]
% id_feprime [integer,private]
% id_ligand [integer,private]
% id_fe_sol [integer,private]
% id_expkt [integer,private]
% id_expkremint [integer,private]
% id_hp_temp_lim [integer,private]
% id_hp_o2lim [integer,private]
% id_hp_jingest_n [integer,private]
% id_hp_jingest_p [integer,private]
% id_hp_jingest_fe [integer,private]
% id_hp_jingest_sio2 [integer,private]
% id_irr_inst [integer,private]
% id_irr_mix [integer,private]
% id_irr_aclm_inst [integer,private]
% id_chl2sfcchl [integer,private]
% id_jalk [integer,private]
% id_jalkc [integer,private]
% id_jalk_plus_btm [integer,private]
% id_jdic [integer,private]
% id_jdicc [integer,private]
% id_jno3c [integer,private]
% id_jpo4c [integer,private]
% id_jsio4c [integer,private]
% id_jdic_plus_btm [integer,private]
% id_jnh4 [integer,private]
% id_jndet [integer,private]
% id_jnh4_plus_btm [integer,private]
% id_jno3denit_wc [integer,private]
% id_juptake_no3amx [integer,private]
% id_juptake_nh4amx [integer,private]
% id_jprod_n2amx [integer,private]
% id_juptake_nh4nitrif [integer,private]
% id_jprod_no3nitrif [integer,private]
% id_jo2resp_wc [integer,private]
% id_co2_csurf [integer,private]
% id_pco2_csurf [integer,private]
% id_co2_alpha [integer,private]
% id_nh3_csurf [integer,private]
% id_nh3_alpha [integer,private]
% id_fcadet_arag [integer,private]
% id_fcadet_calc [integer,private]
% id_ffedet [integer,private]
% id_fndet [integer,private]
% id_fpdet [integer,private]
% id_fsidet [integer,private]
% id_fntot [integer,private]
% id_fptot [integer,private]
% id_fsitot [integer,private]
% id_ffetot [integer,private]
% id_flithdet [integer,private]
% id_fcadet_arag_btm [integer,private]
% id_fcadet_calc_btm [integer,private]
% id_ffedet_btm [integer,private]
% id_flithdet_btm [integer,private]
% id_fndet_btm [integer,private]
% id_fpdet_btm [integer,private]
% id_fsidet_btm [integer,private]
% id_fntot_btm [integer,private]
% id_fptot_btm [integer,private]
% id_ffetot_btm [integer,private]
% id_fsitot_btm [integer,private]
% id_fcased_burial [integer,private]
% id_fcased_redis [integer,private]
% id_fcased_redis_surfresp [integer,private]
% id_cased_redis_coef [integer,private]
% id_cased_redis_delz [integer,private]
% id_ffe_sed [integer,private]
% id_ffe_geotherm [integer,private]
% id_ffe_iceberg [integer,private]
% id_fnfeso4red_sed [integer,private]
% id_fno3denit_sed [integer,private]
% id_fnoxic_sed [integer,private]
% id_frac_burial [integer,private]
% id_fn_burial [integer,private]
% id_fp_burial [integer,private]
% id_nphyto_tot [integer,private]
% id_no3_in_source [integer,private]
% id_pco2surf [integer,private]
% id_pnh3surf [integer,private]
% id_sfc_alk [integer,private]
% id_sfc_cadet_arag [integer,private]
% id_sfc_cadet_calc [integer,private]
% id_sfc_dic [integer,private]
% id_sfc_fed [integer,private]
% id_sfc_ldon [integer,private]
% id_sfc_sldon [integer,private]
% id_sfc_srdon [integer,private]
% id_sfc_no3 [integer,private]
% id_sfc_nh4 [integer,private]
% id_sfc_po4 [integer,private]
% id_sfc_sio4 [integer,private]
% id_sfc_htotal [integer,private]
% id_sfc_o2 [integer,private]
% id_sfc_chl [integer,private]
% id_sfc_irr [integer,private]
% id_sfc_irr_aclm [integer,private]
% id_sfc_irr_mem_dp [integer,private]
% id_sfc_temp [integer,private]
% id_btm_temp [integer,private]
% id_btm_temp_old [integer,private]
% id_btm_o2_old [integer,private]
% id_btm_o2 [integer,private]
% id_btm_no3 [integer,private]
% id_btm_alk [integer,private]
% id_btm_dic [integer,private]
% id_grid_kmt_diag [integer,private]
% id_k_bot_diag [integer,private]
% id_rho_dzt_kmt_diag [integer,private]
% id_rho_dzt_bot_diag [integer,private]
% id_btm_htotal [integer,private]
% id_btm_htotal_old [integer,private]
% id_btm_co3_sol_arag [integer,private]
% id_btm_co3_sol_arag_old [integer,private]
% id_btm_co3_sol_calc [integer,private]
% id_btm_co3_sol_calc_old [integer,private]
% id_btm_co3_ion [integer,private]
% id_btm_co3_ion_old [integer,private]
% id_btm_omega_calc [integer,private]
% id_btm_omega_arag [integer,private]
% id_cased_2d [integer,private]
% id_sfc_co3_ion [integer,private]
% id_sfc_co3_sol_arag [integer,private]
% id_sfc_co3_sol_calc [integer,private]
% id_runoff_flux_alk [integer,private]
% id_runoff_flux_dic [integer,private]
% id_runoff_flux_di14c [integer,private]
% id_runoff_flux_fed [integer,private]
% id_runoff_flux_lith [integer,private]
% id_runoff_flux_no3 [integer,private]
% id_runoff_flux_ldon [integer,private]
% id_runoff_flux_sldon [integer,private]
% id_runoff_flux_srdon [integer,private]
% id_runoff_flux_ndet [integer,private]
% id_runoff_flux_pdet [integer,private]
% id_runoff_flux_po4 [integer,private]
% id_runoff_flux_ldop [integer,private]
% id_runoff_flux_sldop [integer,private]
% id_runoff_flux_srdop [integer,private]
% id_tot_layer_int_c [integer,private]
% id_tot_layer_int_fe [integer,private]
% id_tot_layer_int_n [integer,private]
% id_tot_layer_int_p [integer,private]
% id_tot_layer_int_si [integer,private]
% id_tot_layer_int_o2 [integer,private]
% id_tot_layer_int_alk [integer,private]
% id_wc_vert_int_c [integer,private]
% id_wc_vert_int_dic [integer,private]
% id_wc_vert_int_doc [integer,private]
% id_wc_vert_int_poc [integer,private]
% id_wc_vert_int_n [integer,private]
% id_wc_vert_int_p [integer,private]
% id_wc_vert_int_fe [integer,private]
% id_wc_vert_int_si [integer,private]
% id_wc_vert_int_o2 [integer,private]
% id_wc_vert_int_alk [integer,private]
% id_wc_vert_int_chemoautopp [integer,private]
% id_wc_vert_int_npp [integer,private]
% id_wc_vert_int_net_phyto_resp [integer,private]
% id_wc_vert_int_jdiss_sidet [integer,private]
% id_wc_vert_int_jdiss_cadet [integer,private]
% id_wc_vert_int_jo2resp [integer,private]
% id_wc_vert_int_jprod_cadet [integer,private]
% id_wc_vert_int_jno3denit [integer,private]
% id_wc_vert_int_jprod_no3nitrif [integer,private]
% id_wc_vert_int_juptake_nh4 [integer,private]
% id_wc_vert_int_jprod_nh4 [integer,private]
% id_wc_vert_int_juptake_no3 [integer,private]
% id_wc_vert_int_nfix [integer,private]
% id_wc_vert_int_jfe_iceberg [integer,private]
% id_wc_vert_int_jno3_iceberg [integer,private]
% id_wc_vert_int_jpo4_iceberg [integer,private]
% id_wc_vert_int_jprod_n2amx [integer,private]
% id_total_filter_feeding [integer,private]
% id_nlg_diatoms [integer,private]
% id_nmd_diatoms [integer,private]
% id_jprod_allphytos_100 [integer,private]
% id_jprod_allphytos_200 [integer,private]
% id_jprod_diat_100 [integer,private]
% id_mld_aclm [integer,private]
% id_q_si_2_n_lg_diatoms [integer,private]
% id_q_si_2_n_md_diatoms [integer,private]
% id_hp_jingest_n_100 [integer,private]
% id_hp_jremin_n_100 [integer,private]
% id_hp_jprod_ndet_100 [integer,private]
% id_jprod_lithdet_100 [integer,private]
% id_jprod_sidet_100 [integer,private]
% id_jprod_cadet_calc_100 [integer,private]
% id_jprod_cadet_arag_100 [integer,private]
% id_jprod_mesozoo_200 [integer,private]
% id_dp_fac [integer,private]
% id_daylength [integer,private]
% id_jremin_ndet_100 [integer,private]
% id_f_ndet_100 [integer,private]
% id_f_don_100 [integer,private]
% id_f_silg_100 [integer,private]
% id_f_simd_100 [integer,private]
% id_f_mesozoo_200 [integer,private]
% id_fndet_100 [integer,private]
% id_fpdet_100 [integer,private]
% id_ffedet_100 [integer,private]
% id_fcadet_calc_100 [integer,private]
% id_fcadet_arag_100 [integer,private]
% id_flithdet_100 [integer,private]
% id_fsidet_100 [integer,private]
% id_fntot_100 [integer,private]
% id_fptot_100 [integer,private]
% id_ffetot_100 [integer,private]
% id_fsitot_100 [integer,private]
% id_o2min [integer,private]
% id_z_o2min [integer,private]
% id_z_sat_arag [integer,private]
% id_z_sat_calc [integer,private]
% id_b_di14c [integer,private]
% id_c14_2_n [integer,private]
% id_c14o2_csurf [integer,private]
% id_c14o2_alpha [integer,private]
% id_fpo14c [integer,private]
% id_j14c_decay_dic [integer,private]
% id_j14c_decay_doc [integer,private]
% id_j14c_reminp [integer,private]
% id_jdi14c [integer,private]
% id_jdo14c [integer,private]
% id_di14c [integer,private]
% id_do14c [integer,private]
% id_f_alk_int_100 [integer,private]
% id_f_dic_int_100 [integer,private]
% id_f_din_int_100 [integer,private]
% id_f_fed_int_100 [integer,private]
% id_f_po4_int_100 [integer,private]
% id_f_sio4_int_100 [integer,private]
% id_jo2_plus_btm [integer,private]
% id_jo2 [integer,private]
% id_jo2c [integer,private]
% id_jalk_100 [integer,private]
% id_jdic_100 [integer,private]
% id_jdin_100 [integer,private]
% id_jfed_100 [integer,private]
% id_jpo4_100 [integer,private]
% id_jsio4_100 [integer,private]
% id_thetao [integer,private]
% id_dissic [integer,private]
% id_dissicnat [integer,private]
% id_dissicabio [integer,private]
% id_dissi14cabio [integer,private]
% id_dissoc [integer,private]
% id_phyc [integer,private]
% id_zooc [integer,private]
% id_bacc [integer,private]
% id_detoc [integer,private]
% id_calc [integer,private]
% id_arag [integer,private]
% id_phydiat [integer,private]
% id_phydiaz [integer,private]
% id_phypico [integer,private]
% id_phymisc [integer,private]
% id_zmicro [integer,private]
% id_zmeso [integer,private]
% id_talk [integer,private]
% id_talknat [integer,private]
% id_ph [integer,private]
% id_phnat [integer,private]
% id_phabio [integer,private]
% id_o2_cmip [integer,private]
% id_o2sat [integer,private]
% id_no3_cmip [integer,private]
% id_pka_nh3 [integer,private]
% id_nh4_cmip [integer,private]
% id_po4_cmip [integer,private]
% id_dfe [integer,private]
% id_si [integer,private]
% id_chl_cmip [integer,private]
% id_chldiat [integer,private]
% id_chldiaz [integer,private]
% id_chlpico [integer,private]
% id_chlmisc [integer,private]
% id_poc [integer,private]
% id_pon [integer,private]
% id_pop [integer,private]
% id_bfe [integer,private]
% id_bsi [integer,private]
% id_phyn [integer,private]
% id_phyp [integer,private]
% id_phyfe [integer,private]
% id_physi [integer,private]
% id_co3 [integer,private]
% id_co3nat [integer,private]
% id_co3abio [integer,private]
% id_co3satcalc [integer,private]
% id_co3satarag [integer,private]
% id_pp [integer,private]
% id_pnitrate [integer,private]
% id_pphosphate [integer,private]
% id_pbfe [integer,private]
% id_pbsi [integer,private]
% id_parag [integer,private]
% id_pcalc [integer,private]
% id_expc [integer,private]
% id_expn [integer,private]
% id_expp [integer,private]
% id_expfe [integer,private]
% id_expsi [integer,private]
% id_expcalc [integer,private]
% id_exparag [integer,private]
% id_remoc [integer,private]
% id_dcalc [integer,private]
% id_darag [integer,private]
% id_ppdiat [integer,private]
% id_ppdiaz [integer,private]
% id_pppico [integer,private]
% id_ppmisc [integer,private]
% id_bddtdic [integer,private]
% id_bddtdin [integer,private]
% id_bddtdip [integer,private]
% id_bddtdife [integer,private]
% id_bddtdisi [integer,private]
% id_bddtalk [integer,private]
% id_fescav [integer,private]
% id_fediss [integer,private]
% id_graz [integer,private]
% id_dissicos [integer,private]
% id_dissicnatos [integer,private]
% id_dissicabioos [integer,private]
% id_dissi14cabioos [integer,private]
% id_dissocos [integer,private]
% id_phycos [integer,private]
% id_zoocos [integer,private]
% id_baccos [integer,private]
% id_detocos [integer,private]
% id_calcos [integer,private]
% id_aragos [integer,private]
% id_phydiatos [integer,private]
% id_phydiazos [integer,private]
% id_phypicoos [integer,private]
% id_phymiscos [integer,private]
% id_zmicroos [integer,private]
% id_zmesoos [integer,private]
% id_talkos [integer,private]
% id_talknatos [integer,private]
% id_phos [integer,private]
% id_phnatos [integer,private]
% id_phabioos [integer,private]
% id_o2os [integer,private]
% id_o2satos [integer,private]
% id_no3os [integer,private]
% id_nh4os [integer,private]
% id_po4os [integer,private]
% id_dfeos [integer,private]
% id_sios [integer,private]
% id_chlos [integer,private]
% id_chldiatos [integer,private]
% id_chldiazos [integer,private]
% id_chlpicoos [integer,private]
% id_chlmiscos [integer,private]
% id_ponos [integer,private]
% id_popos [integer,private]
% id_bfeos [integer,private]
% id_bsios [integer,private]
% id_phynos [integer,private]
% id_phypos [integer,private]
% id_phyfeos [integer,private]
% id_physios [integer,private]
% id_co3os [integer,private]
% id_co3natos [integer,private]
% id_co3abioos [integer,private]
% id_co3satcalcos [integer,private]
% id_co3sataragos [integer,private]
% id_limndiat [integer,private]
% id_limndiaz [integer,private]
% id_limnpico [integer,private]
% id_limnmisc [integer,private]
% id_limirrdiat [integer,private]
% id_limirrdiaz [integer,private]
% id_limirrpico [integer,private]
% id_limirrmisc [integer,private]
% id_limfediat [integer,private]
% id_limfediaz [integer,private]
% id_limfepico [integer,private]
% id_limfemisc [integer,private]
% id_limpdiat [integer,private]
% id_limpdiaz [integer,private]
% id_limppico [integer,private]
% id_limpmisc [integer,private]
% id_intpp [integer,private]
% id_intppnitrate [integer,private]
% id_intppdiat [integer,private]
% id_intppdiaz [integer,private]
% id_intpppico [integer,private]
% id_intppmisc [integer,private]
% id_intpbn [integer,private]
% id_intpbp [integer,private]
% id_intpbfe [integer,private]
% id_intpbsi [integer,private]
% id_intpcalcite [integer,private]
% id_intparag [integer,private]
% id_epc100 [integer,private]
% id_epn100 [integer,private]
% id_epp100 [integer,private]
% id_epfe100 [integer,private]
% id_epsi100 [integer,private]
% id_epcalc100 [integer,private]
% id_eparag100 [integer,private]
% id_intdic [integer,private]
% id_intdoc [integer,private]
% id_intpoc [integer,private]
% id_spco2 [integer,private]
% id_spco2nat [integer,private]
% id_spco2abio [integer,private]
% id_dpco2 [integer,private]
% id_dpco2nat [integer,private]
% id_dpco2abio [integer,private]
% id_dpo2 [integer,private]
% id_fgco2 [integer,private]
% id_fgco2nat [integer,private]
% id_fgco2abio [integer,private]
% id_fg14co2abio [integer,private]
% id_fgo2 [integer,private]
% id_icfriver [integer,private]
% id_fric [integer,private]
% id_ocfriver [integer,private]
% id_froc [integer,private]
% id_intpn2 [integer,private]
% id_fsn [integer,private]
% id_frn [integer,private]
% id_fsfe [integer,private]
% id_frfe [integer,private]
% id_zo2min [integer,private]
% id_zsatcalc [integer,private]
% id_zsatarag [integer,private]
% id_fddtdic [integer,private]
% id_fddtdin [integer,private]
% id_fddtdip [integer,private]
% id_fddtdife [integer,private]
% id_fddtdisi [integer,private]
% id_fddtalk [integer,private]
% id_fbddtdic [integer,private]
% id_fbddtdin [integer,private]
% id_fbddtdip [integer,private]
% id_fbddtdife [integer,private]
% id_fbddtdisi [integer,private]
% id_fbddtalk [integer,private]

type generic_cobalt/vardesc¶

An auxiliary type for storing varible names.

Type fields

% name [character(len=fm_string_len)] :: The variable name in a NetCDF file.
% longname [character(len=fm_string_len)] :: The long name of that variable.
% hor_grid [character(len=1)] :: The hor. grid: u, v, h, q, or 1.
% z_grid [character(len=1)] :: The vert. grid: L, i, or 1.
% t_grid [character(len=1)] :: The time description: s, a, m, or 1.
% units [character(len=fm_string_len)] :: The dimensions of the variable.
% mem_size [character(len=1)] :: The size in memory: d or f.

7.1.3.5. Function/Subroutine Documentation¶

subroutine generic_cobalt/generic_cobalt_register(tracer_list)¶

Call to: co2_calc do_14c mod_name user_add_tracers

subroutine generic_cobalt/generic_cobalt_init(tracer_list, force_update_fluxes)¶

Call to: cobalt do_nh3_atm_ocean_exchange do_nh3_diag id_clock_bacteria_growth id_clock_ballast_loops id_clock_carbon_calculations id_clock_cobalt_calc_diagnostics id_clock_cobalt_send_diagnostics id_clock_other_losses id_clock_phyto_growth id_clock_production_loop id_clock_source_sink_loop1 id_clock_source_sink_loop2 id_clock_source_sink_loop3 id_clock_source_sink_loop4 id_clock_source_sink_loop5 id_clock_source_sink_loop6 id_clock_zooplankton_calculations scheme_nitrif user_add_params user_allocate_arrays

subroutine generic_cobalt/generic_cobalt_register_diag(diag_list)¶

Call to: bact cobalt diazo do_14c large medium missing_value1 package_name phyto small zoo

subroutine generic_cobalt/user_add_paramsNone()¶

Call to: as_param_cobalt bact cobalt diazo gamma_nitrif irr_inhibit k_nh3_nitrif k_o2_nit large medium o2_min_nit package_name phyto small sperd spery zoo
Called from: generic_cobalt_init

subroutine generic_cobalt/user_add_tracers(tracer_list)¶

Call to: as_param_cobalt cobalt do_14c do_nh3_atm_ocean_exchange package_name scheme_nitrif sperd vb_nh3
Called from: generic_cobalt_register

subroutine generic_cobalt/generic_cobalt_update_from_coupler(tracer_list)¶

subroutine generic_cobalt/generic_cobalt_update_from_bottom(tracer_list, dt, tau, model_time)¶

Call to: cobalt diazo large medium phyto small

subroutine generic_cobalt/generic_cobalt_update_from_source(tracer_list, Temp, Salt, rho_dzt, dzt, hblt_depth, ilb, jlb, tau, dt, grid_dat, model_time, nbands, max_wavelength_band, sw_pen_band, opacity_band, internal_heat, frunoff, geolat, eqn_of_state)¶

Parameters: eqn_of_state :: [in] Equation of state structure
Call to: bact calc_pka_nh3 co2_calc co2_dope_vec cobalt diazo do_14c do_nh3_atm_ocean_exchange do_nh3_diag do_vertfill_pre epsln g_tracer_utils::g_tracer_get_next g_tracer_utils::g_tracer_is_prog g_tracer_utils::g_tracer_vertfill id_clock_bacteria_growth id_clock_ballast_loops id_clock_carbon_calculations id_clock_cobalt_calc_diagnostics id_clock_cobalt_send_diagnostics id_clock_other_losses id_clock_phyto_growth id_clock_production_loop id_clock_source_sink_loop1 id_clock_source_sink_loop2 id_clock_source_sink_loop3 id_clock_source_sink_loop4 id_clock_source_sink_loop5 id_clock_source_sink_loop6 id_clock_zooplankton_calculations imbalance_tolerance large medium missing_value1 num_phyto num_prey num_zoo phyto saltout_correction scheme_nitrif scheme_no3_nh4_lim small sperd spery vb_nh3 zoo

subroutine generic_cobalt/generic_cobalt_set_boundary_values(tracer_list, SST, SSS, rho, ilb, jlb, tau, dzt, model_time)¶

Call to: as_param_cobalt calc_pka_nh3 co2_calc co2_dope_vec cobalt do_14c do_nh3_atm_ocean_exchange epsln saltout_correction schmidt_w vb_nh3

subroutine generic_cobalt/generic_cobalt_endNone()¶

Call to: user_deallocate_arrays

subroutine generic_cobalt/user_allocate_arraysNone()¶

Call to: bact co2_dope_vec cobalt diazo do_14c do_nh3_diag large medium num_phyto num_zoo phyto zoo
Called from: generic_cobalt_init